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Pedican
Pediatric cancer database
General information | Literature | Expression | Regulation | Variant | Interaction

Basic Information

Gene ID

4982

Name

TNFRSF11B

Synonymous

OCIF|OPG|TR1;tumor necrosis factor receptor superfamily, member 11b;TNFRSF11B;tumor necrosis factor receptor superfamily, member 11b

Definition

osteoclastogenesis inhibitory factor|osteoprotegerin|tumor necrosis factor receptor superfamily member 11B

Position

8q24

Gene Type

protein-coding

Gene Regulation:

Transcription Factors
Post Translational Modification From dbPTM
Methylation Profile From DiseaseMeth database

Transcription Factors   [Top]

Regulation From TransFac database

Apo2L(m) + OPG(h) <==> Apo2L(m):OPG(h) (binding)
Apo2L(h) + OPG(h) <==> Apo2L(h):OPG(h) (binding)
RANKL(m) + OPG(h) <==> RANKL(m):OPG(h) (binding)
RANKL-2(h) + OPG(h) <==> RANKL-2(h):OPG(h) (binding)
TNFRSF11B(h) --> OPG(h) (expression).
Apo2L(h) + OPG(h) <==> OPG(h):Apo2L(h) (binding)
OPG(h) + RANKL(h) <==> OPG(h):RANKL(h) (binding)
OPG(h) --> icam1(h) (increase of abundance)
OPG(h) --> vcam1(h) (increase of abundance)
OPG(h) --> E-selectin(h) (increase of abundance)
OPG(h) --> VCAM1(h) (transactivation)
OPG(h) --> SELE(h) (transactivation)
TNFRSF11B(h) --> OPG(h) (expression).

Post Translational Modification   [Top]

Location (AA)

PTM type

Literature

Database

98N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
152N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
165N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
178N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0
289N-linked (GlcNAc...) (Potential).Swiss-Prot 53.0

Methylation Profile   [Top]

Chromosome

Location

Source

chr8

Promoter: 120032992 - 120034992Agilent_014791

chr8

Promoter: 120032992 - 120034992GSE27584

chr8

Promoter: 120032992 - 120034992Agilent_014791_44K


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