| PMID | Fusion genes | Description | Disease | Classification |
| 10088556 | EWS-FLI-1 | EWS-FLI-1 | Ewing's sarcoma | Bone |
| 10197585 | PAX3-FKHR | PAX3-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 10463610 | TEL-AML1 | TEL-AML1 fusions | acute lymphoblastic leukemia | Hematological |
| 10463613 | TEL-AML1 | TEL-AML1 fusions | leukemia | Hematological |
| 10534762 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 10534762 | PAX7-FKHR | PAX7-FKHR | Rhabdomyosarcoma | muscular |
| 10557309 | PAX3-FKHR | PAX3-FKHR fusion oncogene | Alveolar rhabdomyosarcoma | muscular |
| 10965000 | TEL-AML1 | TEL-AML1 | acute lymphoblastic leukemia | Hematological |
| 11001911 | TEL-AML1 | TEL-AML1 | acute lymphoblastic leukemia | Hematological |
| 11106814 | TEL-AML-1 | TEL-AML-1 | acute lymphoblastic leukemia | Hematological |
| 11178636 | EWS-FLI1 | EWS-FLI1 | neuroectodermal Tumor | Neurological |
| 11441341 | EWS-ERG | EWS-ERG fusion | Ewing's sarcoma | Bone |
| 11567233 | EWS-FLI1 | EWS-FLI1 | Ewing's sarcoma | Bone |
| 11607823 | PAX3-FKHR | PAX3-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 11607823 | PAX7-FKHR | PAX7-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 11751416 | ETV6-NTRK3 | ETV6-NTRK3 | fibrous Tumors | Connective tissue |
| 12034531 | COL1A1-PDGFB | COL1A1-PDGFB | dermatofibrosarcoma protuberans | Connective tissue |
| 12034531 | COL1A1-PDGFB | COL1A1-PDGFB | giant cell fibroblastoma | Connective tissue |
| 12170781 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 12170781 | PAX7-FKHR | PAX7-FKHR | Rhabdomyosarcoma | muscular |
| 12186432 | EWS/FLI-1 | EWS/FLI-1 | Ewing's sarcoma | Bone |
| 12509448 | EWS/FLI-1 | EWS/FLI-1 | Ewing's sarcoma | Bone |
| 12661001 | COL1A1-PDGFB | COL1A1-PDGFB | dermatofibrosarcoma protuberans | Connective tissue |
| 12736494 | EWS-FLI1 | EWS-FLI1 | Ewing's sarcoma | Bone |
| 12907633 | FUS/ERG | FUS/ERG | Ewing's sarcoma | Bone |
| 12917640 | CLTC-TFE3 | CLTC-TFE3 | Renal cell Carcinomas | Renal |
| 12917640 | PRCC-TFE3 | PRCC-TFE3 | Renal cell Carcinomas | Renal |
| 12917640 | PSF-TFE3 | PSF-TFE3 | Renal cell Carcinomas | Renal |
| 12917640 | NONO-TFE3 | NONO-TFE3 | Renal cell Carcinomas | Renal |
| 12917640 | ASPL-TFE3 | ASPL-TFE3 | Renal cell Carcinomas | Renal |
| 12973047 | ETV6-NTRK3 | ETV6-NTRK3 | infantile fibrosarcoma | Connective tissue |
| 133 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 13679433 | CARS-ALK | CARS-ALK | inflammatory myofibroblastic Tumors | muscular |
| 14668342 | ETV6-NTRK3 | ETV6-NTRK3 | spindle cell sarcoma | Connective tissue |
| 14973077 | Ews/Fli-1 | Ews/Fli-1 | Ewing's sarcoma | Bone |
| 14973077 | Ews/Fli-1 | Ews/Fli-1 | neuroblastoma | Neurological |
| 15000827 | NPM-ALK | NPM-ALK | large cell lymphoma | Immunological |
| 15150091 | EWSR1-ATF1 | EWSR1-ATF1 | melanoma | Dermatological |
| 15155899 | TEL-AML1 | TEL-AML1 | acute lymphoblastic leukemia | Hematological |
| 15156184 | TEL-AML1 | TEL-AML1 | acute lymphoblastic leukemia | Hematological |
| 15168592 | AML1/MTG8 | AML1/MTG8 | acute myelocytic leukemia | Hematological |
| 15168592 | PML/RAR alpha | PML/RAR alpha | acute myelocytic leukemia | Hematological |
| 15168592 | MYH11/CBF beta | MYH11/CBF beta | acute myelocytic leukemia | Hematological |
| 15184910 | PAX3-FKHR | PAX3-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 15217836 | EVT6/RUNX1 | EVT6/RUNX1 | acute lymphoblastic leukemia | Hematological |
| 15313887 | PAX3(7)/FKHR | PAX3(7)/FKHR | Rhabdomyosarcoma | muscular |
| 15313887 | PAX3/NCOA1 | PAX3/NCOA1 | Rhabdomyosarcoma | muscular |
| 15342383 | EWS-FLI1 | EWS-FLI1 | Rhabdomyosarcoma | muscular |
| 15387886 | TEL-AML1 | TEL-AML1 | acute lymphoblastic leukemia | Hematological |
| 15387886 | MLL-AF4 | MLL-AF4 | acute lymphoblastic leukemia | Hematological |
| 15387886 | BCR-ABL | BCR-ABL | acute lymphoblastic leukemia | Hematological |
| 15387886 | E2A-PBX | E2A-PBX | acute lymphoblastic leukemia | Hematological |
| 15630450 | TEL-AML1 | TEL-AML1 | acute lymphoblastic leukemia | Hematological |
| 15630450 | E2A-PBX1 | E2A-PBX1 | acute lymphoblastic leukemia | Hematological |
| 15748890 | EWS-FLI1 | EWS-FLI1 | Ewing's sarcoma | Bone |
| 15764578 | TPM3-ALK | TPM3-ALK | myofibroblastic sarcomas | muscular |
| 15764578 | TPM4-ALK | TPM4-ALK | myofibroblastic sarcomas | muscular |
| 16607274 | MLL-AF4 | MLL-AF4 | infant leukaemia | Hematological |
| 16646077 | EWS-FLI1 | EWS-FLI1 | Ewing's sarcoma | Bone |
| 16790090 | PPP2R2A/CHEK2 | PPP2R2A/CHEK2 | teratoma | unclassified |
| 16807766 | PRCC-TFE3 | PRCC-TFE3 | Renal cell Carcinomas | Renal |
| 17097083 | PAX3-FKHR | PAX3-FKHR | multiple primary alveolar rhabdomyosarcomas | muscular |
| 17114343 | EWS/FLI | EWS/FLI | Ewing's sarcoma | Bone |
| 17154184 | EWS-FLI1 | EWS-FLI1 | Ewing's sarcoma | Bone |
| 17283122 | ASPL-TFE3 | ASPL-TFE3 | renal adenoCarcinomas | Renal |
| 17311532 | PAX3-FKHR | PAX3-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 17311532 | PAX7-FKHR | PAX7-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 17337387 | COL1A1-PDGFB | COL1A1-PDGFB | dermatofibrosarcoma protuberans | Connective tissue |
| 17350470 | PAX3-FOXO1A | PAX3-FOXO1A | Rhabdomyosarcoma | muscular |
| 17350470 | PAX7-FOXO1A | PAX7-FOXO1A | Rhabdomyosarcoma | muscular |
| 17425403 | EWS/FLI | EWS/FLI | Ewing's sarcoma | Bone |
| 17431644 | PAX3/FKHR | PAX3/FKHR | Rhabdomyosarcoma | muscular |
| 17431644 | EWS/FLI-1 | EWS/FLI-1 | Ewing's sarcoma | Bone |
| 17431644 | EWS/ERG | EWS/ERG | Ewing's sarcoma | Bone |
| 17438102 | EWS/FLI1 | EWS/FLI1 | Ewing's sarcoma | Bone |
| 17525748 | PAX3/FKHR | PAX3/FKHR | Alveolar rhabdomyosarcoma | muscular |
| 17611665 | MLL-AF4 | MLL-AF4 | acute lymphoblastic leukemia | Hematological |
| 17611665 | TEL-AML1 | TEL-AML1 | acute lymphoblastic leukemia | Hematological |
| 17638879 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 17690209 | EWS-SP3 | EWS-SP3 | small round cell Tumors | Dermatological |
| 17690209 | EWS-ETV1 | EWS-ETV1 | small round cell Tumors | Dermatological |
| 17690209 | EWS-FEV | EWS-FEV | small round cell Tumors | Dermatological |
| 18202291 | TEL-AML1 | TEL-AML1 | leukemia | Hematological |
| 18212050 | EWS/FLI1 | EWS/FLI1 | Ewing's sarcoma | Bone |
| 18212050 | EWS/ERG | EWS/ERG | Ewing's sarcoma | Bone |
| 18391632 | PAX3-FOX01 | PAX3-FOX01 | Rhabdomyosarcoma | muscular |
| 18414034 | PAX3-FOXO1 | PAX3-FOXO1 | muscle Tumor | muscular |
| 18457914 | PAX3-FOXO1 | PAX3-FOXO1 | Rhabdomyosarcoma | muscular |
| 18561177 | PAX7-FOXO1 | PAX7-FOXO1 | Alveolar rhabdomyosarcoma | muscular |
| 18708938 | PAX-3/FKHR | PAX-3/FKHR | Rhabdomyosarcoma | muscular |
| 18845499 | BCR/ABL | BCR/ABL | acute lymphoblastic leukemia | Hematological |
| 18845499 | TEL/AML1 | TEL/AML1 | acute lymphoblastic leukemia | Hematological |
| 19175284 | PAX3-FKHR | PAX3-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 19235922 | PAX3-FOXO1 | PAX3-FOXO1 | Rhabdomyosarcoma | muscular |
| 19235922 | PAX7-FOXO1 | PAX7-FOXO1 | Rhabdomyosarcoma | muscular |
| 19339268 | Pax3-Fkhr | Pax3-Fkhr | Alveolar rhabdomyosarcoma | muscular |
| 19422036 | PAX3-FOXO1 | PAX3-FOXO1 | Alveolar rhabdomyosarcoma | muscular |
| 19422036 | PAX7-FOXO1 | PAX7-FOXO1 | Alveolar rhabdomyosarcoma | muscular |
| 19478459 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 19937730 | KIAA1549-BRAF | KIAA1549-BRAF | astrocytoma | Neurological |
| 19995953 | MLL-AF4 | MLL-AF4 | acute lymphoblastic leukemia | Hematological |
| 2010 | EVT6-RUNX1 | ETV6-RUNX1 | acute lymphoblastic leukemia | Hematological |
| 20211010 | EVT6-RUNX1 | ETV6-RUNX1 | acute lymphoblastic leukemia | Hematological |
| 20211010 | PML-RARA | PML-RARA | acute myelocytic leukemia | Hematological |
| 20382729 | EWS-FLI-1 | EWS-FLI-1 | Ewing's sarcoma | Bone |
| 20405298 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 20442286 | EWS-FLI1 | EWS-FLI1 | Ewing's sarcoma | Bone |
| 20815032 | EWSR1-POU5F1 | EWSR1-POU5F1 | myoepithelial Tumors | muscular |
| 20815032 | EWSR1-PBX1 | EWSR1-PBX1 | myoepithelial Tumors | muscular |
| 20920256 | MLL-CT45A2 | MLL-CT45A2 | acute leukemias | Hematological |
| 20979180 | EWS-FLI1 | EWS-FLI1 | Ewing's sarcoma | Bone |
| 21076462 | VCL-ALK | VCL-ALK | Renal cell Carcinomas | Renal |
| 21160474 | EVT6-RUNX1 | ETV6-RUNX1 | leukemia | Hematological |
| 21220470 | PAX3-FOXO1 | PAX3-FOXO1 | Alveolar rhabdomyosarcoma | muscular |
| 21220470 | PAX7-FOXO1 | PAX7-FOXO1 | Alveolar rhabdomyosarcoma | muscular |
| 21344764 | AML1-ETO | AML1-ETO | acute myelocytic leukemia | Hematological |
| 21344764 | PML-RARA | PML-RARA | acute myelocytic leukemia | Hematological |
| 21344764 | CBFB-MYH11 | CBFB-MYH11 | acute myelocytic leukemia | Hematological |
| 21403840 | EWS-FLI1 | EWS-FLI1 | Ewing's sarcoma | Bone |
| 21628403 | EVTV6-RUNX1 | ETV6-RUNX1 | acute lymphoblastic leukemia | Hematological |
| 21643012 | EWS/Fli1 | EWS/Fli1 | Ewing's sarcoma | Bone |
| 21853155 | EWS-FLI-1 | EWS-FLI-1 | Ewing's sarcoma | Bone |
| 21900195 | EVT6-RUNX1 | ETV6-RUNX1 | acute lymphoblastic leukemia | Hematological |
| 22089931 | PAX3-FOXO1 | PAX3-FOXO1 | Rhabdomyosarcoma | muscular |
| 22089931 | PAX7-FOXO1 | PAX7-FOXO1 | Rhabdomyosarcoma | muscular |
| 22094584 | EVT6-RUNX1 | EVT6-RUNX1 | acute lymphoblastic leukemia | Hematological |
| 22153773 | COL1A1-PDGFB | COL1A1-PDGFB | dermatofibrosarcoma protuberans | Connective tissue |
| 22192458 | NPM-ALK | NPM-ALK | neuroblastoma | Neurological |
| 22210920 | ETV6-NTRK3 | ETV6-NTRK3 | secretory Carcinoma | Dermatological |
| 22333587 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 22429598 | EWSR1-ETV4 | EWSR1-ETV4 | Ewing's sarcoma | Bone |
| 22447499 | PAX7-FOXO1 | PAX7-FOXO1 | Alveolar rhabdomyosarcoma | muscular |
| 22447499 | PAX3-FOXO1 | PAX3-FOXO1 | Alveolar rhabdomyosarcoma | muscular |
| 22710718 | PAX3-FOXO1A | PAX3-FOXO1A | Alveolar rhabdomyosarcoma | muscular |
| 22710718 | PAX7-FOXO2A | PAX7-FOXO2A | Alveolar rhabdomyosarcoma | muscular |
| 23077088 | ETV6-RUNX1 | ETV6-RUNX1 | acute lymphoblastic leukemia | Hematological |
| 23098478 | TEL-AML1 | TEL-AML1 | acute lymphoblastic leukemia | Hematological |
| 23151340 | ETV6/RUNX1 | ETV6/RUNX1 | acute lymphoblastic leukemia | Hematological |
| 23257420 | AML1/ETO | AML1/ETO | acute myelocytic leukemia | Hematological |
| 23257420 | CBFB/MYH11 | CBFB/MYH11 | acute myelocytic leukemia | Hematological |
| 23257420 | PML/RARa | PML/RARa | acute myelocytic leukemia | Hematological |
| 23264495 | FLT3/ITD | FLT3/ITD | acute myelocytic leukemia | Hematological |
| 23264495 | FLT3/TKD | FLT3/TKD | acute myelocytic leukemia | Hematological |
| 23372815 | PAX3-FOXO1 | PAX3-FOXO1 | Rhabdomyosarcoma | muscular |
| 23432099 | COL1A1-PDGFB | COL1A1-PDGFB | dermatofibrosarcoma protuberans | Connective tissue |
| 23463074 | BRD4-NUT | BRD4-NUT | NUT midline Carcinoma | unclassified |
| 23463074 | BRD3-NUT | BRD3-NUT | NUT midline Carcinoma | unclassified |
| 23463663 | PAX3-NCOA1 | PAX3-NCOA1 | spindle cell rhabdomyosarcoma | muscular |
| 23463663 | SRF-NCOA2 | SRF-NCOA2 | spindle cell rhabdomyosarcoma | muscular |
| 23706910 | EWSR1-ERG | EWSR1-ERG | Ewing's sarcoma | Bone |
| 23706910 | EWSR2-FLI1 | EWSR2-FLI1 | Ewing's sarcoma | Bone |
| 23722552 | ETV6-RUNX1 | ETV6-RUNX1 | acute lymphoblastic leukemia | Hematological |
| 23797277 | PAX3-FKHR | PAX3-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 23799156 | FKHR-PAX3 | FKHR-PAX3 | Alveolar rhabdomyosarcoma | muscular |
| 23890983 | PLAG1-RAD51L1 | PLAG1-RAD51L1 | lipoblastoma | unclassified |
| 7493136 | EWS/FLI-1 | EWS/FLI-1 | Ewing's sarcoma | Bone |
| 7506981 | EWS/FLI-1 | EWS/FLI-1 | peripheral primitive neuroectodermal Tumor | Neurological |
| 7530783 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 7530783 | PAX7-FKHR | PAX7-FKHR | Rhabdomyosarcoma | muscular |
| 7530783 | EWS-FLI1 | EWS-FLI1 | Ewing's sarcoma | Bone |
| 7530783 | EWS-ERG | EWS-ERG | Ewing's sarcoma | Bone |
| 7530783 | EWS-WT1 | EWS-WT1 | desmoplastic small-round-cell Tumor | Dermatological |
| 7636557 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 7862145 | PAX3-FKHR | PAX3-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 7882340 | EWS/FLI1 | EWS/FLI1 | Ewing's sarcoma | Bone |
| 8577710 | EWS-FL11 | EWS-FL11 | neuroblastoma | Neurological |
| 8917562 | PAX3/FKHR | PAX3/FKHR | Rhabdomyosarcoma | muscular |
| 9223312 | PAX3-FKHR | PAX3-FKHR | Alveolar rhabdomyosarcoma | muscular |
| 9293447 | EWS-FLI-1 | EWS-FLI-1 | Ewing's sarcoma | Bone |
| 9293447 | EWS-ERG | EWS-ERG | Ewing's sarcoma | Bone |
| 9293447 | PAX3-FKHR | PAX3-FKHR | Rhabdomyosarcoma | muscular |
| 9293447 | PAX7-FKHR | PAX7-FKHR | Rhabdomyosarcoma | muscular |
| 9293447 | EWS-WTI | EWS-WTI | desmoplastic small-round-cell Tumor | Dermatological |
| 9333021 | BCR-ABL | BCR-ABL | chronic myelogenous leukemia | Hematological |
| 9372085 | TEL-AML1 | TEL-AML1 | acute leukemias | Hematological |
| 9372085 | BCR-ABL | BCR-ABL | acute leukemias | Hematological |
| 9539781 | TEL-AML1 | TEL-AML1 | leukemia | Hematological |
| 9737691 | E2A-HLF | E2A-HLF | acute lymphoblastic leukemia | Hematological |