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Cancer metastasis database

Annotation category 5

Gene information

Gene ID 4049
Symbol

LTA

Synonymous

LT|TNFB|TNFSF1

Full name

lymphotoxin alpha

Gene description

LT-alpha|TNF superfamily, member 1|TNF-beta|lymphotoxin-alpha|tumor necrosis factor beta|tumor necrosis factor ligand superfamily member 1

Cytoband

6p21.3

Gene type

protein-coding

Synonymous

MIM:153440; HGNC:HGNC:6709; Ensembl:ENSG00000226979; HPRD:01084; Vega:OTTHUMG00000031135

Pathway and disease

Pathways and Diseases

Detail

Pathway

IL2 signaling events mediated by STAT5;PID Curated;200158

Pathway

Type I diabetes mellitus;KEGG PATHWAY;hsa04940

Pathway

Cytokine-cytokine receptor interaction;KEGG PATHWAY;hsa04060

Pathway

Apoptosis signaling pathway;PANTHER;P00006

Pathway

IL4-mediated signaling events;PID Curated;200018

Pathway

tnfr2 signaling pathway;PID BioCarta;100014

Disease

atopy;GAD

Disease

Premature birth;FunDO

Disease

oral submucous fibrosis;GAD

Disease

endometriosis;GAD

Disease

Alzheimer's disease;GAD

Disease

Migraine;FunDO

Disease

Lung cancer;FunDO

Disease

Melanoma;FunDO

Disease

diabetes, type 2;GAD

Disease

urinary tract infections after renal transplantation;GAD

Disease

Purpura, Thrombocytopenic, Idiopathic;FunDO

Disease

Psoriasis;FunDO

Disease

Breast cancer;FunDO

Disease

Stomach cancer;FunDO

Disease

bronchiectatic disease;GAD

Disease

intima-media thickness;GAD

Disease

hepatitis B;GAD

Disease

DEVELOPMENTAL;GAD

Disease

hypertension;GAD

Disease

serum tumor necrosis factor-alpha levels;GAD

Disease

Amnionitis;FunDO

Disease

Leprosy;FunDO

Disease

atherosclerosis, coronary;GAD

Disease

IMMUNE;GAD

Disease

Multiple myeloma;FunDO

Disease

Brain Ischemia;GAD

Disease

Rheumatoid arthritis;FunDO

Disease

rheumatoid arthritis;GAD

Disease

testicular cancer;GAD

Disease

Sarcoidosis;FunDO

Disease

Peptic ulcer;FunDO

Disease

METABOLIC;GAD

Disease

chronic immune thrombocytopenic purpura.;GAD

Disease

Schizophrenia;FunDO

Disease

Asthma;GAD

Disease

Postoperative infectious complications;GAD

Disease

Colon cancer;FunDO

Disease

Osteoporosis;GAD

Disease

sepsis;GAD

Disease

Diabetes mellitus;FunDO

Disease

diabetes, type 1;GAD

Disease

gastric cancer;GAD

Disease

REPRODUCTION;GAD

Disease

CARDIOVASCULAR;GAD

Disease

Stroke;GAD

Disease

Stroke;FunDO

Disease

CANCER;GAD

Disease

Myocardial Infarction;GAD

Disease

Bladder cancer;FunDO

Disease

Psoriatic arthritis, susceptibility to;OMIM

Disease

Endometriosis;FunDO

Disease

INFECTION;GAD

Disease

NEUROLOGICAL;GAD

Disease

palmoplantar pustulosis;GAD

Disease

Hypertension;FunDO

Disease

vasopressor infusion requirement;GAD

Disease

Enteritis;FunDO

Disease

Pancreatitis;FunDO

Disease

Asthma;FunDO

Disease

myelopathy, HTLV-1 associated;GAD

Disease

chronic obstructive pulmonary disease/COPD;GAD

Disease

complications after major abdominal operations;GAD

Disease

Myocardial infarction, susceptibility to;OMIM

Disease

limb deficiency anomalies;GAD

Disease

erythrocyte catalase activity;GAD

Disease

myocardial infarct;GAD

Disease

Leprosy, susceptibility to, 4;OMIM

Disease

Lupus;GAD

Disease

Atherosclerosis;FunDO

Sequence Information

Nucleotide Sequence

>4049 : length: 2474
GGTAGGTGGAAGTGTATCTCTGCTCTCTAGAGCTGGCACCAGGAGTTGAGTCTCAGTGGAGGATGCATTGGGATTCAATTGGAGGAACAGGCCTGGAAAAGAATAATGAGATTGAAGAGG
GTCAGTTTGAGGACTCAGGTTGGGGCAGGTTTGGATTAAGTTAGGAAAAGGATCTGGGAGGGACTCTGTTCAGTGTAGGTCAACTGAGCATTATGTAGCCCAAAGATAAATTTAAACCCT
GCTTCAAGCTTACAATCTAGTGGGGAGGCAGACCCATACCTAGTTAACTGATTCAAGGCATGATGAGTAAACTTTAAGATGATTACAGAAAGAGGGGAGATTAAGTCCATTTGAAAGCAT
CCAGGGAGCCTCTGAGGAGACAGCATTTGAACTTGCTCTAATGAATGGGTTCACTAGGTGGAGGTGGATGGAAAGGTTCCATAGGCGAATAACACGTCTTGAGCGAGCCTGACAAGTCAG
AAAATGCAGTATGTTCTGGGAAAGGAGCGTCCTGAGGGAGAAGAAGCACAGGTGTGAGGGAACATGTGATGAAGAAAGGACCACAGAAAGTCAAGGTCAGAGATTGGACTGCATCCTGTG
GGCAGTGGTCCAGGTGACGATGAAAAAGAGGGAGAACAGTTCTACCCACAGATTTTACAGTTGAGGGAAATTTTACCAGTTCCTGAAAAAGTGGTTCGTTAAGGGGGCTAGTCTTTTGAG
ACATCACACGAAAACGGAAGAAAACTTTGGAAGGTGTCTGCCACATTGATCCTGGAATGTGTGTTTATTTGGGGTTATATAAATCTGTTCTGTGGAAGCCACCTGAAGTCAGGAAGAGAT
GGAGGGCATCCTTCAGGAGTGAGATGAGACCTCATCATACTTGACTGTCCAGCATCATCTCTGAGCCTCAGCCTTTCCTGCCTTTGACTGAAACAGCAGTATCTTCTAAGCCCTGGGGGC
TTCCCCGGGCCCCAGCCCCGACCTAGAACCCGCCCGCTGCCTGCCACGCTGCCACTGCCGCTTCCTCTATAAAGGGACCTGAGCGTCCGGGCCCAGGGGCTCCGCACAGCAGGTGAGGCT
CTCCTGCCCCATCTCCTTGGGCTGCCCGTGCTTCGTGCTTTGGACTACCGCCCCGCAGTGTCCTGCCCTCTGCCTGGGCCTCGGTCCCTCCTGCACCTGCTGCCTGGATCCCCGGCCTGC
CTGGGCCTGGGCCTTGGTTCTCCCCATGACACCACCTGAACGTCTCTTCCTCCCAAGGGTGCGTGGCACCACCCTACACCTCCTCCTTCTGGGGCTGCTGCTGGTTCTGCTGCCTGGGGC
CCAGGGGCTCCCTGGTGTTGGCCTCACACCTTCAGCTGCCCAGACTGCCCGTCAGCACCCCAAGATGCATCTTGCCCACAGCACCCTCAAACCTGCTGCTCACCTCATTGGAGACCCCAG
CAAGCAGAACTCACTGCTCTGGAGAGCAAACACGGACCGTGCCTTCCTCCAGGATGGTTTCTCCTTGAGCAACAATTCTCTCCTGGTCCCCACCAGTGGCATCTACTTCGTCTACTCCCA
GGTGGTCTTCTCTGGGAAAGCCTACTCTCCCAAGGCCACCTCCTCCCCACTCTACCTGGCCCATGAGGTCCAGCTCTTCTCCTCCCAGTACCCCTTCCATGTGCCTCTCCTCAGCTCCCA
GAAGATGGTGTATCCAGGGCTGCAGGAACCCTGGCTGCACTCGATGTACCACGGGGCTGCGTTCCAGCTCACCCAGGGAGACCAGCTATCCACCCACACAGATGGCATCCCCCACCTAGT
CCTCAGCCCTAGTACTGTCTTCTTTGGAGCCTTCGCTCTGTAGAACTTGGAAAAATCCAGAAAGAAAAAATAATTGATTTCAAGACCTTCTCCCCATTCTGCCTCCATTCTGACCATTTC
AGGGGTCGTCACCACCTCTCCTTTGGCCATTCCAACAGCTCAAGTCTTCCCTGATCAAGTCACCGGAGCTTTCAAAGAAGGAATTCTAGGCATCCCAGGGGACCACACCTCCCTGAACCA
TCCCTGATGTCTGTCTGGCTGAGGATTTCAAGCCTGCCTAGGAATTCCCAGCCCAAAGCTGTTGGTCTGTCCCACCAGCTAGGTGGGGCCTAGATCCACACACAGAGGAAGAGCAGGCAC
ATGGAGGAGCTTGGGGGATGACTAGAGGCAGGGAGGGGACTATTTATGAAGGCAAAAAAATTAAATTATTTATTTATGGAGGATGGAGAGAGGGGAATAATAGAAGAACATCCAAGGAGA
AACAGAGACAGGCCCAAGAGATGAAGAGTGAGAGGGCATGCGCACAAGGCTGACCAAGAGAGAAAGAAGTAGGCATGAGGGATCACAGGGCCCCAGAAGGCAGGGAAAGGCTCTGAAAGC
CAGCTGCCGACCAGAGCCCCACACGGAGGCATCTGCACCCTCGATGAAGCCCAATAAACCTCTTTTCTCTGAAA

Protein Sequence

>4049 : length: 205
MTPPERLFLPRVCGTTLHLLLLGLLLVLLPGAQGLPGVGLTPSAAQTARQHPKMHLAHSNLKPAAHLIGDPSKQNSLLWRANTDRAFLQDGFSLSNNSLLVPTSGIYFVYSQVVFSGKAY
SPKATSSPLYLAHEVQLFSSQYPFHVPLLSSQKMVYPGLQEPWLHSMYHGAAFQLTQGDQLSTHTDGIPHLVLSPSTVFFGAFAL