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Cancer metastasis database

Annotation category 5

Gene information

Gene ID 56949
Symbol

XAB2

Synonymous

HCNP|HCRN|NTC90|SYF1

Full name

XPA binding protein 2

Gene description

SYF1 homolog, RNA splicing factor|SYF1 pre-mRNA-splicing factor|XPA-binding protein 2|crn-related protein kim1|pre-mRNA-splicing factor SYF1

Cytoband

19p13.2

Gene type

protein-coding

Synonymous

MIM:610850; HGNC:HGNC:14089; Ensembl:ENSG00000076924; HPRD:18306; Vega:OTTHUMG00000182404

Pathway and disease

Pathways and Diseases

Detail

Pathway

Spliceosome;KEGG PATHWAY;hsa03040

Pathway

Formation of transcription-coupled NER (TC-NER) repair complex;PID Reactome;500065

Pathway

DNA Repair;Reactome;REACT:216

Sequence Information

Nucleotide Sequence

>56949 : length: 2682
TCTCCTGTACCTGGGCATCCAGAAAAATGGTGGTGATGGCGCGACTCTCGCGGCCCGAGCGGCCGGACCTTGTCTTCGAGGAAGAGGACCTCCCCTATGAGGAGGAAATCATGCGGAACC
AATTCTCTGTCAAATGCTGGCTTCGCTACATCGAGTTCAAACAGGGCGCCCCGAAGCCCAGGCTCAATCAGCTATACGAGCGGGCACTCAAGCTGCTGCCCTGCAGCTACAAACTCTGGT
ACCGATACCTGAAGGCGCGTCGGGCACAGGTGAAGCATCGCTGTGTGACCGACCCTGCCTATGAAGATGTCAACAACTGTCATGAGAGGGCCTTTGTGTTCATGCACAAGATGCCTCGTC
TGTGGCTAGATTACTGCCAGTTCCTCATGGACCAGGGGCGCGTCACACACACCCGCCGCACCTTCGACCGTGCCCTCCGGGCACTGCCCATCACGCAGCACTCTCGAATTTGGCCCCTGT
ATCTGCGCTTCCTGCGCTCACACCCACTGCCTGAGACAGCTGTGCGAGGCTATCGGCGCTTCCTCAAGCTGAGTCCTGAGAGTGCAGAGGAGTACATTGAGTACCTCAAGTCAAGTGACC
GGCTGGATGAGGCCGCCCAGCGCCTGGCCACCGTGGTGAACGACGAGCGTTTCGTGTCTAAGGCCGGCAAGTCCAACTACCAGCTGTGGCACGAGCTGTGCGACCTCATCTCCCAGAATC
CGGACAAGGTACAGTCCCTCAATGTGGACGCCATCATCCGCGGGGGCCTCACCCGCTTCACCGACCAGCTGGGCAAGCTCTGGTGTTCTCTCGCCGACTACTACATCCGCAGCGGCCATT
TCGAGAAGGCTCGGGACGTGTACGAGGAGGCCATCCGGACAGTGATGACCGTGCGGGACTTCACACAGGTGTTTGACAGCTACGCCCAGTTCGAGGAGAGCATGATCGCTGCAAAGATGG
AGACCGCCTCGGAGCTGGGGCGCGAGGAGGAGGATGATGTGGACCTGGAGCTGCGCCTGGCCCGCTTCGAGCAGCTCATCAGCCGGCGGCCCCTGCTCCTCAACAGCGTCTTGCTGCGCC
AAAACCCACACCACGTGCACGAGTGGCACAAGCGTGTCGCCCTGCACCAGGGCCGCCCCCGGGAGATCATCAACACCTACACAGAGGCTGTGCAGACGGTGGACCCCTTCAAGGCCACAG
GCAAGCCCCACACTCTGTGGGTGGCGTTTGCCAAGTTTTATGAGGACAACGGACAGCTGGACGATGCCCGTGTCATCCTGGAGAAGGCCACCAAGGTGAACTTCAAGCAGGTGGATGACC
TGGCAAGCGTGTGGTGTCAGTGCGGAGAGCTGGAGCTCCGACACGAGAACTACGATGAGGCCTTGCGGCTGCTGCGAAAGGCCACGGCGCTGCCTGCCCGCCGGGCCGAGTACTTTGATG
GTTCAGAGCCCGTGCAGAACCGCGTGTACAAGTCACTGAAGGTCTGGTCCATGCTCGCCGACCTGGAGGAGAGCCTCGGCACCTTCCAGTCCACCAAGGCCGTGTACGACCGCATCCTGG
ACCTGCGTATCGCAACACCCCAGATCGTCATCAACTATGCCATGTTCCTGGAGGAGCACAAGTACTTCGAGGAGAGCTTCAAGGCGTACGAGCGCGGCATCTCGCTGTTCAAGTGGCCCA
ACGTGTCCGACATCTGGAGCACCTACCTGACCAAATTCATTGCCCGCTATGGGGGCCGCAAGCTGGAGCGGGCACGGGACCTGTTTGAACAGGCTCTGGACGGCTGCCCCCCAAAATATG
CCAAGACCTTGTACCTGCTGTACGCACAGCTGGAGGAGGAGTGGGGCCTGGCCCGGCATGCCATGGCCGTGTACGAGCGTGCCACCAGGGCCGTGGAGCCCGCCCAGCAGTATGACATGT
TCAACATCTACATCAAGCGGGCGGCCGAGATCTATGGGGTCACCCACACCCGCGGCATCTACCAGAAGGCCATTGAGGTGCTGTCGGACGAGCACGCGCGTGAGATGTGCCTGCGGTTTG
CAGACATGGAGTGCAAGCTCGGGGAGATTGACCGCGCCCGGGCCATCTACAGCTTCTGCTCCCAGATCTGTGACCCCCGGACGACCGGCGCGTTCTGGCAGACGTGGAAGGACTTTGAGG
TCCGGCATGGCAATGAGGACACCATCAAGGAAATGCTGCGTATCCGGCGCAGCGTGCAGGCCACGTACAACACGCAGGTCAACTTCATGGCCTCGCAGATGCTCAAGGTCTCGGGCAGTG
CCACGGGCACCGTGTCTGACCTGGCCCCTGGGCAGAGTGGCATGGACGACATGAAGCTGCTGGAACAGCGGGCAGAGCAGCTGGCGGCTGAGGCGGAGCGTGACCAGCCCTTGCGCGCCC
AGAGCAAGATCCTGTTCGTGAGGAGTGACGCCTCCCGGGAGGAGCTGGCAGAGCTGGCACAGCAGGTCAACCCCGAGGAGATCCAGCTGGGCGAGGACGAGGACGAGGACGAGATGGACC
TGGAGCCCAACGAGGTTCGGCTGGAGCAGCAGAGCGTGCCAGCCGCAGTGTTTGGGAGCCTGAAGGAAGACTGACCCGTCCCTCCCCCATCCCCCCTCCCCACCCCCTCCCCAATACAGC
TACGTTTGTACATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Protein Sequence

>56949 : length: 855
MVVMARLSRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
KEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLAAEAERDQPLRAQSKILFVRSDASREELAELAQQVNPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED