Course realted files
Bioinformatics course-related files
The files for network prac:
- list1 network, list1 node propertise file
- list2 network, list2 node propertise file
- list3 network, list3 node propertise file
- list4 network, list4 node propertise file
- list5 network, list5 node propertise file
- list6 network, list6 node propertise file
- list7 network, list7 node propertise file
- list8 network, list8 node propertise file
- list9 network, list9 node propertise file
- list10 network, list10 node propertise file
- list11 network, list11 node propertise file
- list12 network, list12 node propertise file
- list13 network, list13 node propertise file
Molecular biology course-related files
The tutorial file here
Genetics course-related files
| All the files are free to academic researchers world wide. Not for profit purposes. |
| All the 377 human Epithelial-Mesenchymal Transition genes with cancer types |
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| The protein fasta files here; The DNA sequence here; The 90 genes here. |
| The 716 tumor suppressor genes: |
| The flat files here; The protein fasta files here; The 90 genes here. |
| The human genes with pathway annotation: |
| The flat files here. Download the file, choose any pathway interesting, put into the cBio portal and inteprate the results. |
When using these resources for publications, please cite: |
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Min Zhao, Lei Kong, Yining Liu, Hong Qu (2014) dbEMT: a literature-based resource for Epithelial-Mesenchymal Transition genes. Min Zhao, Jingchun Sun, Zhongming Zhao (2013) TSGene: a web resource for tumor suppressor genes. Nucleic Acids Research, 41: D970-D976 |
Using Excel for bioinformatics
| General annoucement |
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| All the files are free to academic researchers world wide. Not for profit purposes. |
| General data manipulation using Excel |
| The protein fasta file here; The gene expression file here; The GO annotation file here. |